A quick update from Andrew from the Global Microbial Identifier conference in Vancouver, Canada.

Ep8 Global Microbial Identifier in a nutshell

In this episode, Kevin Libuit and Andrew Page discuss the utility of open source software in the world of public health and pathogen genomics. They highlight the importance of reproducibility, cost-effectiveness, and community collaboration that open source software offers. The conversation also touches on the different open source licenses and the challenges of maintaining and supporting open source software in the long term. They distinguish between open source workflows and closed source platforms, emphasizing the need for reproducibility in workflows and the challenges of making platforms fully open source. Overall, the discussion emphasizes the value and challenges of open source software in public health.

Takeaways

Open source software in public health enables reproducibility, cost-effectiveness, and community collaboration.
Different open source licenses have varying levels of permissiveness and restrictions.
Open source workflows allow for reproducibility and interoperability, while closed source platforms may limit accessibility.
Maintaining and supporting open source software in the long term can be challenging.
Efforts are being made to establish standards and assessments for open source software in public health.

Ep 26 Utility of Open-Source Software

The Bioinformatics Lab

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